What's the difference between dihedral and pair?

Dihedral


Definition:

  • (a.) Having two plane faces; as, the dihedral summit of a crystal.

Example Sentences:

  • (1) These variants, which yielded a robust illusion, included dihedral angles in place of the arrowheads of the classical pattern.
  • (2) Time histories of the dihedral angles and residue-residue cross-strand distances are used to study the behavior of the sheet structure.
  • (3) Comparison of the geometry of the engineered disulfide with those of naturally observed disulfides in proteins shows that the engineered bridge adopts a left-handed spiral conformation with a typical set of dihedral angles and C alpha-C alpha distance.
  • (4) Via Karplus-type equations, they are transformed into dihedral angles and a good agreement is found, allowing for a determination of the phi angle with a certain range of degrees.
  • (5) A combination of two procedures was used to search the conformational space for fentanyl, which included nested dihedral scans, geometry optimization and molecular dynamics simulation at different temperatures.
  • (6) The results of high resolution 1H and 13C NMR using dimethylsulfoxide and 2H2O as solvents, combined with a new method for determining dihedral angles phi and psi from 13C and 1H spin lattice relaxation times are presented.
  • (7) A total of 1244 experimental constraints were used, including 1120 distance constraints, 103 dihedral angle constraints and 21 hydrogen bond constraints.
  • (8) We have developed a method to obtain the dihedral angles for a low-energy structure of a protein, starting with the X-ray structure; it is applied here to examine the degree of flexibility of bovine pancreatic trypsin inhibitor.
  • (9) Interproton distances were derived from crosspeak volumes in two dimensional Nuclear Overhauser Effect spectra, and dihedral angles were calculated from appropriate coupling constants.
  • (10) The orientation of the N-phenyl group with respect to the N-acyl moiety is essentially invariant with an approximately 90 degrees dihedral angle.
  • (11) The solution structures were calculated using 409 distance and 73 dihedral angle restraints.
  • (12) On the basis of the conformational energy (delta E, difference from the most stable conformational energy), which is calculated as a function of the dihedral angle (theta) between the two phenyl rings, biphenyl congeners can be classified into four groups with different conformations.
  • (13) A hydrated cobalt ion is found to coordinate to two N7 atoms of adjacent guanines, forcing these two guanines to destack with a large dihedral angle (32 degrees), in the dimer of the tetragonal form.
  • (14) The dihedral angle between the two benzenoid rings measures 1.4(1) degrees.
  • (15) The solution structure of insectotoxin 15A (35 residues) from scorpion Buthus eupeus was determined on the basis of 386 interproton distance restraints 12 hydrogen-bonding restraints and 113 dihedral angle restraints derived from 1H NMR experiments.
  • (16) It is concluded that weak attractive interactions between CH groups and S atoms are capable of stabilizing rotamers with unusually low (about 30 degrees) values of the SS-CC dihedral angle.
  • (17) beta-Breakers can be located automatically using a consensus approach based on algorithmic secondary structure assignment, solvent accessibility and backbone dihedral angles.
  • (18) It is shown that the dihedral angle omega of the Man alpha 1-6Man beta linkage exhibits low flexibility with a preference for the omega = 180 degrees conformation when residue D2 is present and high flexibility when this residue is absent.
  • (19) The majority of paperclips are shown to have tightly clustered sets of main-chain dihedral angles.
  • (20) Measurements on model compounds have been used to characterise a Karplus-type relationship between 3JCOCH and dihedral angles in sugar.

Pair


Definition:

  • (n.) A number of things resembling one another, or belonging together; a set; as, a pair or flight of stairs. "A pair of beads." Chaucer. Beau. & Fl. "Four pair of stairs." Macaulay. [Now mostly or quite disused, except as to stairs.]
  • (n.) Two things of a kind, similar in form, suited to each other, and intended to be used together; as, a pair of gloves or stockings; a pair of shoes.
  • (n.) Two of a sort; a span; a yoke; a couple; a brace; as, a pair of horses; a pair of oxen.
  • (n.) A married couple; a man and wife.
  • (n.) A single thing, composed of two pieces fitted to each other and used together; as, a pair of scissors; a pair of tongs; a pair of bellows.
  • (n.) Two members of opposite parties or opinion, as in a parliamentary body, who mutually agree not to vote on a given question, or on issues of a party nature during a specified time; as, there were two pairs on the final vote.
  • (n.) In a mechanism, two elements, or bodies, which are so applied to each other as to mutually constrain relative motion.
  • (v. i.) To be joined in paris; to couple; to mate, as for breeding.
  • (v. i.) To suit; to fit, as a counterpart.
  • (v. i.) Same as To pair off. See phrase below.
  • (v. t.) To unite in couples; to form a pair of; to bring together, as things which belong together, or which complement, or are adapted to one another.
  • (v. t.) To engage (one's self) with another of opposite opinions not to vote on a particular question or class of questions.
  • (v. t.) To impair.

Example Sentences:

  • (1) The distance between the end of fic and the start of pabA was 31 base pairs.
  • (2) At the fepB operator, a 31 base-pair Fur-protected region was identified, corresponding to positions -19 to +12 with respect to the transcriptional start site.
  • (3) Mapping of the cross-link position between U2 and U6 RNAs is consistent with base-pairing between the 5' domain of U2 and the 3' end of U6 RNA.
  • (4) This value is about 30 times higher than the association constant for guanine-cytosine base pair formation under the same experimental conditions.
  • (5) For related pairs, both the primes (first pictures) and targets (second pictures) varied in rated "typicality" (Rosch, 1975), being either typical or relatively atypical members of their primary superordinate category.
  • (6) Plasma renin activity (PRA) and aldosterone concentration were measured before and during submaximal exercise in 10 male monozygotic twin pairs who were discordant for smoking.
  • (7) Fifty-two pairs of canine femora were tested to failure in four-point bending.
  • (8) Other DNase I hypersensitive sites located adjacent to the S14 cap site at -65 to -265 base pairs (Hss-1) or upstream at -1.3 kb (Hss-2), -2.1 kb (Hss-3'), -5.3 kb (Hss-4), and -6.2 kb (Hss-5) remained unaffected by changes in S14 gene transcription.
  • (9) Delta roc, which extends from base pairs 41883 to 43825, overlaps the nin5 deletion, which extend from base pairs 40501 to 43306.
  • (10) In all cases, endocrine cells immunoreactive to only one of the paired antisera were detected except for anti-glucagon and anti-glucagon-like peptide 1, which always immunostained the same cells.
  • (11) Arterial-type flows produced a pair of vortex sinks downstream of the branching port.
  • (12) Benzaldehyde's in cherries and cherrystones and amaretto, so it's immediately a base to pair things with."
  • (13) The lengths and heights of the scalae tympani in ten pairs of serially sectioned temporal bones were measured by an adaptation of the serial section method of cochlear reconstruction.
  • (14) Paired tolbutamide and glucose infusions using a square wave technique demonstrated that although early phase insulin secretion is dimished in the fetus, this is not due to an absolute deficiency of stored insulin.
  • (15) The distribution of the amino acid pairs, i, i + 1 in alpha-helical configurations does not differ from the random pairing.
  • (16) Male Sprague Dawley rats either trained (T, N = 9) for 11 wk on a rodent treadmill, remained sedentary, and were fed ad libitum (S, N = 8) or remained sedentary and were food restricted (pair fed, PF, N = 8) so that final body weights were similar to T. After training, T had significantly higher red gastrocnemius muscle citrate synthase activity compared with S and PF.
  • (17) We propose that, for a GC base pair in B conformation, there are two amino proton exchangeable states--a cytosine amino proton exchangeable state and a guanine amino proton exchangeable state; both require the disruption of only the corresponding interbase H bond.
  • (18) Whole gastrocnemius muscles were incubated in Ringer's solution enriched with H2-17O; the paired contralateral gastrocnemius muscles were incubated in a similar solution enriched with deuterons, as well.
  • (19) The building block of cytokeratin IFs is a heterotypic tetramer, consisting of two type I and two type II polypeptides arranged in pairs of laterally aligned coiled coils.
  • (20) For example, stem pairing with a sequence other than wild-type resulted in normal protein binding in vitro but derepression of protein synthesis in vivo.

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