What's the difference between grooving and indentation?

Grooving


Definition:

  • (n.) The act of forming a groove or grooves; a groove, or collection of grooves.

Example Sentences:

  • (1) The ligands bind at discrete sites in the minor groove of DNA, and analysis on DNA sequencing gels show pronounced protection at the ligand binding sites, as well as more generalized protection.
  • (2) Recent reports have indicated the usefulness of nuclear grooves (clefts or notches) as an additional criterion for the diagnosis of papillary thyroid carcinoma in fine needle aspirates; most of these studies were carried out on alcohol-fixed material stained with the Papanicolaou stain or with hematoxylin and eosin, which yield good nuclear details.
  • (3) Intermolecular contacts occur in both oligomers in the minor groove: in the B form through twisted guanine-guanine hydrogen bonding, and in the Z form through base-base stacking and the water network.
  • (4) The nogalose and aminoglucose sugars lie in the minor and major grooves, respectively, of the distorted B-DNA double helix.
  • (5) The AFB1 moiety is face-stacked in the major groove with its long axis approximately perpendicular to the helix axis.
  • (6) These results strongly indicate that metallobleomycin binds in the minor groove of B-DNA and that the 2-amino group of guanine adjacent to the 5' side of the cleaved pyrimidine base is one key element of the specific 5' G-C or G-T recognition by the bleomycin-metal complex.
  • (7) As a basis for the discussion a possible structure for the DNA complex of the phenylated neutral red is considered in which the extra phenyl ring at N-5 of the phenazinium system, protrudes into the large groove of the DNA helix while the tricyclic part of the ligand is inserted between the DNA base-pairs.
  • (8) A high intensity of the reactions was observed in certain cells of the neural groove in 24-hours' embryos and in the neural tube of 48-hours' embryos.
  • (9) Recent STM studies of calf thymus DNA and poly(rA).poly(rU) have shown that the helical pitch and periodic alternation of major and minor grooves can be visualized and reliably measured.
  • (10) In the absence of boxes or grooves, pins markedly enhanced both retention and resistance.
  • (11) Therefore in artificial knee replacement a lateral tilt of the patella sliding groove should not be propagated as 'physiological'.
  • (12) Many antitumor drugs, and many carcinogens, act by binding within the minor groove of double-helical DNA, interfering with both replication and transcription.
  • (13) This instrument, a modification of a corneal trephine, provides a neat, smooth groove of adjustable depth.
  • (14) and the fluid ejected from the ejaculatory groove region (about 0.2 ml.).
  • (15) 3) The significance of minor groove Mtase-DNA interactions to specificity is confirmed.
  • (16) (v) The bis-benzimidazole drug Hoechst-33258, which binds in the minor groove of B-DNA, exhibits very little fluorescence in the presence of the ps hairpins but a normal, enhanced emission with the aps oligonucleotides.
  • (17) We have studied the time-resolved and the steady-state fluorescence of the DNA groove binders 4',6-diamidino-2-phenylindole (DAPI) and Hoechst 33258 with the double stranded DNAs poly(dA-dU) and poly(dI-dC) and their halogenated analogs, poly(dA-I5dU) and poly(dI-Br5dC).
  • (18) The complexation-induced chemical shifts and NOE cross peaks in the NOESY map of the 1:1 complex of lexitropsin (1) and d-[CGCAATTGCG]2 reveal that the thiazole ring of the lexitropsin (1) intercalates between dA4.A5 bases and the rest of the ligand resides in the minor groove of the AT rich core of decamer, thus occupying the 5'-AATT sequence on the DNA.
  • (19) All cases had true hypertelorism and a median nasal groove with absence of the nasal tip.
  • (20) Distamycin, Hoechst 33258, and DAPI were used as agents capable of AT-specific binding in the minor groove of DNA while producing no profound long-range distortion of DNA structure.

Indentation


Definition:

  • (n.) The act of indenting or state of being indented.
  • (n.) A notch or recess, in the margin or border of anything; as, the indentations of a leaf, of the coast, etc.
  • (n.) A recess or sharp depression in any surface.
  • (n.) The act of beginning a line or series of lines at a little distance within the flush line of the column or page, as in the common way of beginning the first line of a paragraph.
  • (n.) The measure of the distance; as, an indentation of one em, or of two ems.

Example Sentences:

  • (1) Over a period of 9 months a 12-year-old girl spontaneously developed a palpable cystic tumor in the upper eye lid which led to an indentation and downward displacement of the globe.
  • (2) Attachment appeared to involve a very close physical proximity of treponemes to the cultured cells; at the site of attachment, no changes such as swelling or indentation of the cultured cell surface were observed.
  • (3) Analysed were the results of surgical treatment, causes of the failure and early recurrence in 108 patients with retinal detachment in whom was performed an indentation of the sclera by means of a balloon (1st group--50) or by an episcleral implant (2d group--58).
  • (4) Thus, the area with separated HL, which is restricted to the region of the PMC released at the stage of PMC ingression, spreads almost entirely throughout the area of the indenting vegetal plate at gastrulation.
  • (5) Evidence for net C3 synthesis was based on (a) incorporation of 14C-labeled amino acids into C3 protein, (b) indentity of the allotype of C3 produced in vitro with that of the doner's serum C3, even in the presence of carrier C3 protein of a different allotype; (c) correspondence of electrophoretic mobility, size, and subunit structure of C3 protein produced in vitro with serum C3; (d) inhibition of C3 production with cycloheximide.
  • (6) The light touch stimulus was a slight indentation of the skin produced through a displacement controlled stimulating probe (tip diameter of 2 mm).
  • (7) Dendritic cells were characterized by their slender cytoplasmic processes, indented nucleus and pale cytoplasm.
  • (8) The monocytes are large cells with an indented nucleus and cytoplasm containing numerous vesicles of different sizes and also a few lysosomes.
  • (9) Kitten units responsive to skin indentation showed no evidence of encoding stimulus magnitude information.
  • (10) The anti-inflammatory effect of dexamethasone was also indentical in both normal and EFAD rats.
  • (11) (1) was employed to calculate the strain rate and stress from the indentation time and the size of the indentation.
  • (12) A mathematical solution has been obtained for the indentation creep and stress-relaxation behavior of articular cartilage where the tissue is modeled as a layer of linear KLM biphasic material of thickness h bonded to an impervious, rigid bony substrate.
  • (13) The responses of slowly-adapting neurons were separated into two components, a "dynamic" response corresponding to activity elicited by the initial indenting ramp and a "static" response produced by the sustained indentation.
  • (14) Therefore, the pleural indentation sign does not exclusively appear in the lung cancer.
  • (15) In the fluoride group, a moderate increase of the indentation length and a reduced calcium loss were observed.
  • (16) Histologically, in addition to diffuse infiltrate of large lymphoid cells with deeply indented nuclei, there were many epithelioid cell granulomas, remarkable tissue eosinophilia and stromal fibrosis, mimicking inflammatory disease.
  • (17) By utilizing high-speed, microcomputer-controlled data logging techniques, simultaneous monitoring of signals from a dynamic load cell and a displacement transducer could be made throughout an indentation test.
  • (18) The central axon of a primary afferent neuron that responded to indentation of the glabrous skin of the lower lip in a slowly adapting fashion was intra-axonally injected with horseradish peroxidase.
  • (19) In addition to the macroglossia, the typical facial signs of this syndrome such as capillary haemangioma of the glabella, soft tissue folds under the eyes and linear indentations of the ear lobes are demonstrable.
  • (20) Cuplike indentations were present on the paunch epithelial surface and were sites of bacterial aggregation.

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